ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAACTTACTTCCTCCGTCCAA miRNA* GGACGGAGGGAGTAAGACTCA mismatches: 4 bulges: 0 |
pre-miRNA
TAGCTTTTCTGAAACTTACTTCCTCCGTCCAAAAATACTTGTCATCAAAATGGATGTATCTAGAACTAAAATACATCTATGATACATCTATTTCAATGAC
AAGTATTTCCGGACGGAGGGAGTAAGACTCAACGATGGC
dot-bracket secondary structure
..(((..(((((..((((((((((((((((..(((((((((((((..(((((((((((((((((...........)))).)))))))))))))..)))))
))))))))..))))))))))))))))..)))..)).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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TAGCTTTTCTGAAACTTACTTCCTCCGTCCAAAAATACTTGTCATCAAAATGGATGTATCTAGAACTAAAATACATCTATGATACATCTATTTCAATGAC
AAGTATTTCCGGACGGAGGGAGTAAGACTCAACGATGGC
dot-bracket secondary structure
..(((..(((((..((((((((((((((((..(((((((((((((..(((((((((((((((((...........)))).)))))))))))))..)))))
))))))))..))))))))))))))))..)))..)).)))
SIMILARITIES| miRBase tae-MIR1135: 8e-18 PMRD tae-miR1135: 8e-18 microPC miR1128: 8e-21 | UniProt no hits RFAM MIR1122: 7e-34 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
